.:: RNAiDB - Gene Page ::. Gene Page - CG Number : CG10388Gene Summary - CG10388:CG10388: The gene Ultrabithorax is referred to in FlyBase by the symbol Dmel\Ubx (CG10388, FBgn0003944). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: protein binding; RNA polymerase II distal enhancer sequence-specific DNA binding; sequence-specific DNA binding; protein domain specific binding; DNA binding. There is experimental evidence for 17 unique biological process terms, many of which group under: biological regulation; system development; cell fate commitment; regulation of developmental process; cellular process; appendage development; multicellular organismal development; regulation of RNA metabolic process; mesoderm morphogenesis; renal tubule development; somatic muscle development; post-embryonic organ morphogenesis; specification of organ identity; open tracheal system development; muscle cell differentiation; segment specification; cardiovascular system development. 497 alleles are reported. The phenotypes of these alleles are annotated with 119 unique terms, many of which group under: organ system subdivision; adult segment; organ system; thoracic segment; larval abdominal segment; hypodermal muscle of larval abdomen; non-connected developing system; A1-7 transverse muscle; embryonic thoracic segment; imaginal precursor. It has 6 annotated transcripts and 6 annotated polypeptides. Protein features are: Homeobox protein, antennapedia type, conserved site; Homeobox, conserved site; Homeodomain; Homeodomain, metazoa; Homeodomain-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed at stages throughout embryogenesis, during early pupal stages. Gene summary for CG10388 is obtained from FlyBase (FB2013_01, released January 23rd, 2013)Experimental Summary - CG10388:CG10388 is not perturbed in primary screen. CG10388 is not tested in classification assay. Cellular phenotyping(Images): Click here to access phenotyping images of gene CG10388.Cell Count:CG_NumberCategoryR1R2R3CG10388Primary screen696705226R1: Replicate No. 1; R2: Replicate No.2; R3: Replicate No. 3Primary screen data - CG10388: SNRNWNFint1Fint2Fint3Fint4FnumFmph1Fmph2Fmph3FclcTint1Tint2Tint3Tint4Rto1Rto2Rto3OktTnumTmph1Tmph2Tmph3TclcCellSize191154-0.083501503-0.3333177631.510378517-0.508074857-0.0432349140.9854483712.1644323131.4171961481.6642499231.2860274530.181653093-0.5151460150.1544094510.055445795-0.260754325-0.0574632910.1667690710.0591041510.7637722972.307665076-0.1988367624.7786831024.4461540381921320.3186457730.0614825320.095308536-0.3510076161.0480646241.0262592090.7999648390.8442232431.4020531620.4671414470.5941942170.1767736171.4499994880.2167705581.1744831240.646299341.5255363081.2413209131.0579725841.4265883670.0871151270.8755052870.4214552111932820.504813506-0.3100365770.200999110.856198502-0.373589722-0.1646027341.418347532-0.197781831-0.1888901961.2197090850.561637636-0.5731832770.454566820.3555638430.271878635-0.615487324-0.107347433-0.038609876-0.23553864-0.6638627711.495003187-0.7783557320.404470099 SN: Slide Number; RN: Replicate Number; WN: Well NumberExperimental Data (Classification Assay):CG10388 is not tested in classification assayIntegrated Annotations for CG10388 :Gene Ontology Annoations: Biological ProcessBiological Process - TermGO IDEvidencespecification of segmental identity, thoraxGO:0007384inferred from mutant phenotype regulation of transcription, DNA-dependentGene Ontology Annoations: Cellular ComponentCellular Component - TermGO IDEvidencenucleusGO:0005634inferred from direct assay nucleusGene Ontology Annoations: Molecular FunctionMolecular Function - TermGO IDEvidenceprotein bindingGO:0005515inferred from physical interaction with DIP1 sequence-specific DNA binding transcription factor activity Other annotations DatabaseLinkFlyBaseClick here to see CG10388 in FlyBaseFLIGHTClick here to see CG10388 in FLIGHT(Compendium of Drosophila in vivo and in vitro RNAi screens)BioGRIDClick here to see CG10388 in BioGRID (Interaction Summary)Off-targetClick here for Off-target data for CG10388Entrez GeneEntrez Gene page for CG10388UniprotUniprot page for CG10388 Endosite Team : Prof. Satyajit Mayor (Contact : mayor@ancbs.res.in) Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
.:: RNAiDB - Gene Page ::. Gene Page - CG Number : CG10388Gene Summary - CG10388:CG10388: The gene Ultrabithorax is referred to in FlyBase by the symbol Dmel\Ubx (CG10388, FBgn0003944). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: protein binding; RNA polymerase II distal enhancer sequence-specific DNA binding; sequence-specific DNA binding; protein domain specific binding; DNA binding. There is experimental evidence for 17 unique biological process terms, many of which group under: biological regulation; system development; cell fate commitment; regulation of developmental process; cellular process; appendage development; multicellular organismal development; regulation of RNA metabolic process; mesoderm morphogenesis; renal tubule development; somatic muscle development; post-embryonic organ morphogenesis; specification of organ identity; open tracheal system development; muscle cell differentiation; segment specification; cardiovascular system development. 497 alleles are reported. The phenotypes of these alleles are annotated with 119 unique terms, many of which group under: organ system subdivision; adult segment; organ system; thoracic segment; larval abdominal segment; hypodermal muscle of larval abdomen; non-connected developing system; A1-7 transverse muscle; embryonic thoracic segment; imaginal precursor. It has 6 annotated transcripts and 6 annotated polypeptides. Protein features are: Homeobox protein, antennapedia type, conserved site; Homeobox, conserved site; Homeodomain; Homeodomain, metazoa; Homeodomain-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed at stages throughout embryogenesis, during early pupal stages. Gene summary for CG10388 is obtained from FlyBase (FB2013_01, released January 23rd, 2013)Experimental Summary - CG10388:CG10388 is not perturbed in primary screen. CG10388 is not tested in classification assay. Cellular phenotyping(Images): Click here to access phenotyping images of gene CG10388.Cell Count:CG_NumberCategoryR1R2R3CG10388Primary screen696705226R1: Replicate No. 1; R2: Replicate No.2; R3: Replicate No. 3Primary screen data - CG10388: SNRNWNFint1Fint2Fint3Fint4FnumFmph1Fmph2Fmph3FclcTint1Tint2Tint3Tint4Rto1Rto2Rto3OktTnumTmph1Tmph2Tmph3TclcCellSize191154-0.083501503-0.3333177631.510378517-0.508074857-0.0432349140.9854483712.1644323131.4171961481.6642499231.2860274530.181653093-0.5151460150.1544094510.055445795-0.260754325-0.0574632910.1667690710.0591041510.7637722972.307665076-0.1988367624.7786831024.4461540381921320.3186457730.0614825320.095308536-0.3510076161.0480646241.0262592090.7999648390.8442232431.4020531620.4671414470.5941942170.1767736171.4499994880.2167705581.1744831240.646299341.5255363081.2413209131.0579725841.4265883670.0871151270.8755052870.4214552111932820.504813506-0.3100365770.200999110.856198502-0.373589722-0.1646027341.418347532-0.197781831-0.1888901961.2197090850.561637636-0.5731832770.454566820.3555638430.271878635-0.615487324-0.107347433-0.038609876-0.23553864-0.6638627711.495003187-0.7783557320.404470099 SN: Slide Number; RN: Replicate Number; WN: Well NumberExperimental Data (Classification Assay):CG10388 is not tested in classification assayIntegrated Annotations for CG10388 :Gene Ontology Annoations: Biological ProcessBiological Process - TermGO IDEvidencespecification of segmental identity, thoraxGO:0007384inferred from mutant phenotype regulation of transcription, DNA-dependentGene Ontology Annoations: Cellular ComponentCellular Component - TermGO IDEvidencenucleusGO:0005634inferred from direct assay nucleusGene Ontology Annoations: Molecular FunctionMolecular Function - TermGO IDEvidenceprotein bindingGO:0005515inferred from physical interaction with DIP1 sequence-specific DNA binding transcription factor activity Other annotations DatabaseLinkFlyBaseClick here to see CG10388 in FlyBaseFLIGHTClick here to see CG10388 in FLIGHT(Compendium of Drosophila in vivo and in vitro RNAi screens)BioGRIDClick here to see CG10388 in BioGRID (Interaction Summary)Off-targetClick here for Off-target data for CG10388Entrez GeneEntrez Gene page for CG10388UniprotUniprot page for CG10388
CG10388: The gene Ultrabithorax is referred to in FlyBase by the symbol Dmel\Ubx (CG10388, FBgn0003944). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: protein binding; RNA polymerase II distal enhancer sequence-specific DNA binding; sequence-specific DNA binding; protein domain specific binding; DNA binding. There is experimental evidence for 17 unique biological process terms, many of which group under: biological regulation; system development; cell fate commitment; regulation of developmental process; cellular process; appendage development; multicellular organismal development; regulation of RNA metabolic process; mesoderm morphogenesis; renal tubule development; somatic muscle development; post-embryonic organ morphogenesis; specification of organ identity; open tracheal system development; muscle cell differentiation; segment specification; cardiovascular system development. 497 alleles are reported. The phenotypes of these alleles are annotated with 119 unique terms, many of which group under: organ system subdivision; adult segment; organ system; thoracic segment; larval abdominal segment; hypodermal muscle of larval abdomen; non-connected developing system; A1-7 transverse muscle; embryonic thoracic segment; imaginal precursor. It has 6 annotated transcripts and 6 annotated polypeptides. Protein features are: Homeobox protein, antennapedia type, conserved site; Homeobox, conserved site; Homeodomain; Homeodomain, metazoa; Homeodomain-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed at stages throughout embryogenesis, during early pupal stages.
Endosite Team : Prof. Satyajit Mayor (Contact : mayor@ancbs.res.in) Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)